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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
158
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
45
transcription factor
43
narrow histone mark
42
broad histone mark
27
control
11
RNA binding protein
3
chromatin remodeller
Date released
126
May, 2021
54
August, 2017
43
December, 2017
39
February, 2018
26
February, 2021
22
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
354
Homo sapiens
Biosample type
2539
tissue
988
primary cell
640
cell line
354
in vitro differentiated cells
10
stem cell
Organ
83
connective tissue
29
embryo
21
epithelium
15
liver
1
adipose tissue
1
heart
Project
354
AMP
Genome assembly (visualization)
280
hg19
247
GRCh38
4
hg18
Lab
300
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
shRNA RNA-seq
assay_slims!
DNA sequencing
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
354 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
5
8
1
1
cardiomyocytes
59
embryonic stem cell
40
7
6
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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