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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
338
ChIP-seq
60
ATAC-seq
30
DNase-seq
1
FAIRE-seq
Assay category
338
DNA binding
91
DNA accessibility
Target of assay
296
histone
296
histone modification
150
broad histone mark
145
narrow histone mark
42
transcription factor
16
RNA binding protein
4
chromatin remodeller
Date released
132
May, 2021
76
August, 2017
47
June, 2019
46
September, 2018
36
December, 2017
28
August, 2021
23
October, 2019
16
February, 2018
6
November, 2017
5
November, 2019
5
September, 2017
4
May, 2019
2
February, 2023
2
November, 2020
1
February, 2021
Available data
903
bam
875
bigWig
554
fastq
429
bed narrowPeak
405
tsv
153
zippedFastqFolder
140
tagAlign
126
bigBed narrowPeak
65
bed bed3+
50
bed broadPeak
50
bigBed broadPeak
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bedgraph
6
bed bed3
4
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
Organism
429
Homo sapiens
Biosample type
tissue
cell line
295
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
124
epithelium
70
pancreas
62
connective tissue
22
kidney
21
vasculature
20
liver
17
blood vessel
14
embryo
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
345
AMP
84
T1D
Genome assembly (visualization)
421
hg19
391
GRCh38
Lab
311
AMP-T2D consortium
114
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
38
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
24
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
shRNA RNA-seq
biosample_type!
tissue
cell line
BIOSAMPLE
ASSAY
429 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
+ See 29 more…
in vitro differentiated cells
adipocyte
42
1
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
+ See 13 more…
stem cell
hESC
2
See all biosamples
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