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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
90
ChIP-seq
36
single cell RNA-seq
27
snATAC-seq
6
WGBS
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
128
Transcription
90
DNA binding
27
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
84
control
5
transcription factor
2
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
1
recombinant protein
Date released
76
February, 2023
47
November, 2017
45
February, 2021
38
September, 2020
19
August, 2017
10
December, 2017
8
February, 2018
5
November, 2018
3
January, 2019
1
August, 2018
1
December, 2018
1
September, 2018
Available data
1485
bam
bigWig
981
fastq
833
bed narrowPeak
524
tsv
481
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
254
Homo sapiens
Biosample type
174
primary cell
tissue
55
cell line
24
in vitro differentiated cells
1
stem cell
Organ
74
epithelium
71
pancreas
50
liver
8
embryo
7
connective tissue
6
blood
6
bodily fluid
1
adipose tissue
Project
159
HPAP
95
AMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
159
Klaus Kaestner, Upenn
95
AMP-T2D consortium
Audit category:
27
audit script error
2
inconsistent ontology term
Audit category:
2
missing controlled_by
assay_title!
shRNA RNA-seq
biosample_type!
tissue
files.file_type!
bigWig
BIOSAMPLE
ASSAY
254 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
6
6
exocrine cell
39
pancreatic beta cell
11
6
pancreatic cell
2
+ See 1 more…
cell line
HepG2
48
1
GM12878
6
in vitro differentiated cells
adipocyte
6
pancreatic endoderm
6
Hepatic endoderm
2
definitive endodermal cell
2
primitive gut cell
2
+ See 6 more…
stem cell
hESC
1
See all biosamples
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