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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
Hi-C
3
pCHi-C
Assay category
8
3D chromatin structure
Date released
5
March, 2020
3
October, 2022
October, 2019
1
August, 2018
1
August, 2021
1
November, 2019
Available data
1421
bam
1350
bigWig
981
fastq
795
bed narrowPeak
516
tsv
458
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
104
bed broadPeak
104
bigBed broadPeak
64
bed bed3+
11
bed bedMethyl
11
bedpe bed3+
11
bigBed bedMethyl
9
hic
7
bed bed3
7
bed bedgraph
4
hdf5
4
txt
3
cool
3
tar
2
csv
2
ibed
1
vcf
Organism
11
Homo sapiens
Biosample type
tissue
5
in vitro differentiated cells
4
primary cell
2
cell line
Organ
5
epithelium
4
pancreas
1
adipose tissue
1
blood vessel
1
connective tissue
1
liver
1
vasculature
1
vein
Project
8
AMP
3
HPAP
Genome assembly (visualization)
10
hg19
Lab
7
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
3
audit script error
assay_title!
shRNA RNA-seq
biosample_type!
tissue
month_released!
October, 2019
BIOSAMPLE
ASSAY
11 results
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Clear Filters
Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
white fat cell
1
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
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