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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
total RNA-seq
16
ATAC-seq
6
MeRIP-seq
4
ChIP-seq
1
pCHi-C
Assay category
69
Transcription
16
DNA accessibility
4
DNA binding
Target of assay
3
control
3
nucleotide modification
3
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
128
February, 2021
90
May, 2021
26
June, 2019
23
October, 2019
22
November, 2019
17
March, 2020
11
February, 2023
8
May, 2020
6
July, 2018
6
November, 2020
4
December, 2017
3
August, 2021
3
May, 2019
2
December, 2019
2
July, 2019
1
February, 2020
1
June, 2018
Available data
73
bam
73
bigWig
69
tsv
4
bed narrowPeak
3
tagAlign
Organism
96
Homo sapiens
Biosample type
68
in vitro differentiated cells
27
cell line
1
primary cell
Organ
28
epithelium
27
pancreas
2
embryo
Project
94
AMP
2
T1D
Genome assembly (visualization)
73
GRCh38
73
hg19
Lab
89
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Kyle Gaulton, UCSD
Audit category:
96
inconsistent ontology term
assay_title!
shRNA RNA-seq
BIOSAMPLE
ASSAY
96 results
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total RNA-seq
ATAC-seq
MeRIP-seq
ChIP-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
cardiomyocytes (cardiac muscle cell)
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
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cell line
EndoC_BH1
4
16
6
1
primary cell
naive B cel
1
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