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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
total RNA-seq
84
RNA microarray
79
ChIP-seq
58
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
2
pCHi-C
1
Hi-C
Assay category
128
Transcription
79
DNA binding
63
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
216
February, 2021
50
May, 2019
43
February, 2023
26
October, 2019
8
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
1
May, 2021
Available data
220
bam
185
bigWig
125
tsv
120
bed narrowPeak
88
txt
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
359
Homo sapiens
Biosample type
291
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
358
AMP
1
T1D
Genome assembly (visualization)
236
GRCh38
205
hg19
Lab
358
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_title!
shRNA RNA-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
359 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
Hi-C
tissue
bone element
84
bone tissue
58
coronary artery
1
5
36
2
tibial artery
1
23
1
2
aorta
1
13
4
2
1
1
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cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
megakaryocyte
1
smooth muscle cell of the coronary artery
1
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