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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
ChIP-seq
4
DNase-seq
4
pCHi-C
Assay category
32
DNA accessibility
19
Transcription
4
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
transcription factor
Date released
31
February, 2023
21
October, 2019
6
June, 2019
1
February, 2020
July, 2019
Available data
32
bed narrowPeak
6
bam
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
59
Homo sapiens
Biosample type
56
tissue
3
primary cell
Organ
921
pancreas
626
connective tissue
502
epithelium
462
adipose tissue
443
liver
351
heart
333
kidney
265
brain
215
vasculature
211
blood vessel
159
bone element
133
artery
117
limb
86
musculature of body
59
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
32
hg19
5
GRCh38
Lab
59
AMP-T2D consortium
assay_title!
shRNA RNA-seq
target.investigated_as!
transcription factor
month_released!
July, 2019
BIOSAMPLE
ASSAY
59 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
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