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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
16
ChIP-seq
2
Hi-C
2
single cell RNA-seq
Assay category
58
Transcription
16
DNA binding
2
3D chromatin structure
Target of assay
11
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
54
February, 2021
13
October, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
May, 2019
1
March, 2020
Available data
122
bam
100
bigWig
bed narrowPeak
58
tsv
38
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
6
tagAlign
2
hic
1
bedpe bed3+
1
tar
Organism
76
Homo sapiens
Biosample type
54
cell line
11
primary cell
11
tissue
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
58
hg19
54
GRCh38
Lab
76
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
shRNA RNA-seq
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
ChIP-seq
Hi-C
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
2
primary cell
endothelial cell of umbilical vein
7
2
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
tissue
tibial artery
1
5
coronary artery
1
2
pulmonary artery
2
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