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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
5
total RNA-seq
4
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
39
DNA binding
6
DNA accessibility
5
Transcription
2
3D chromatin structure
Target of assay
39
histone
39
histone modification
25
broad histone mark
14
narrow histone mark
control
Date released
50
October, 2019
1
February, 2020
1
March, 2020
Available data
49
bam
46
bigWig
40
bed narrowPeak
39
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
5
tsv
4
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
52
Homo sapiens
Biosample type
32
tissue
20
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
48
hg19
43
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
shRNA RNA-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
tibial nerve
24
5
2
1
primary cell
endothelial cell of umbilical vein
15
2
2
1
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