Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
single cell RNA-seq
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
37
DNA accessibility
21
Transcription
3
3D chromatin structure
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
13
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
240
bam
219
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
23
tsv
21
fastq
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
281
Homo sapiens
Biosample type
264
tissue
17
primary cell
Organ
864
pancreas
788
liver
679
connective tissue
491
adipose tissue
448
epithelium
298
heart
286
kidney
281
brain
229
vasculature
224
blood vessel
159
bone element
139
artery
122
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
281
AMP
Genome assembly (visualization)
214
GRCh38
159
hg19
Lab
281
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
single cell RNA-seq
RRBS
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
281 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
Download