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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
single cell RNA-seq
2
RRBS
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
37
DNA accessibility
21
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
15
July, 2019
12
February, 2020
2
November, 2018
1
February, 2023
Available data
240
bam
219
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
21
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
281
Homo sapiens
Biosample type
263
tissue
18
primary cell
Organ
871
pancreas
787
liver
675
connective tissue
489
adipose tissue
454
epithelium
288
kidney
281
brain
257
heart
229
vasculature
223
blood vessel
158
bone element
139
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
18
ureter
16
skeleton
10
lung
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
281
AMP
Genome assembly (visualization)
214
GRCh38
161
hg19
Lab
281
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
single cell RNA-seq
pCHi-C
BIOSAMPLE
ASSAY
281 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 76 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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