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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
243
total RNA-seq
199
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
286
DNA accessibility
279
DNA binding
243
Transcription
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
55
June, 2019
36
February, 2021
34
October, 2019
26
July, 2019
19
September, 2020
9
November, 2017
8
January, 2021
7
August, 2020
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
506
bigWig
501
bam
293
bed narrowPeak
281
fastq
164
tsv
108
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
893
Homo sapiens
Biosample type
2583
tissue
893
primary cell
656
cell line
392
in vitro differentiated cells
10
stem cell
Organ
336
epithelium
272
pancreas
37
vasculature
36
kidney
31
blood vessel
28
connective tissue
22
vein
18
brain
14
liver
13
heart
13
musculature of body
8
blood
8
bodily fluid
5
eye
2
artery
1
adipose tissue
1
bone element
1
bone marrow
1
pericardium
Project
449
AMP
239
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
520
hg19
428
GRCh38
Lab
414
AMP-T2D consortium
239
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
single cell RNA-seq
small RNA-seq
month_released!
November, 2020
BIOSAMPLE
ASSAY
893 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
31
1
pancreatic beta cell
13
21
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
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