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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
23
ChIP-seq
single cell RNA-seq
3
total RNA-seq
WGBS
1
DNase-seq
1
pCHi-C
Assay category
36
DNA accessibility
23
DNA binding
3
Transcription
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
October, 2019
3
February, 2020
2
February, 2021
1
June, 2019
1
March, 2020
Available data
36
bed narrowPeak
24
bam
4
tsv
2
tagAlign
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
bigWig
Organism
63
Homo sapiens
Biosample type
55
tissue
6
primary cell
2
cell line
Organ
237
pancreas
166
epithelium
161
kidney
160
liver
122
brain
104
heart
89
bone element
89
connective tissue
63
blood vessel
63
vasculature
59
adipose tissue
46
artery
27
eye
25
limb
21
musculature of body
14
blood
14
bodily fluid
12
nerve
11
lung
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
186
GRCh38
hg19
Lab
63
AMP-T2D consortium
assay_title!
single cell RNA-seq
WGBS
assembly!
hg19
BIOSAMPLE
ASSAY
63 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
coronary artery
35
2
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
aorta
2
1
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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