Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
64
ATAC-seq
59
total RNA-seq
18
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
70
DNA accessibility
59
Transcription
18
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
16
control
2
broad histone mark
2
histone
2
histone modification
Date released
159
February, 2023
153
August, 2021
135
August, 2017
127
May, 2022
125
November, 2017
123
February, 2021
97
October, 2019
83
May, 2021
81
May, 2020
40
May, 2024
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
September, 2020
17
December, 2017
17
July, 2019
16
January, 2021
16
November, 2018
15
April, 2019
11
May, 2023
10
April, 2020
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
December, 2019
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
Available data
65
bed narrowPeak
64
xls
49
txt
13
bam
10
tsv
9
tagAlign
4
fastq
1
bedpe bed3+
1
bigWig
1
vcf
Organism
156
Homo sapiens
Biosample type
123
tissue
24
cell line
9
in vitro differentiated cells
1
primary cell
Organ
121
kidney
17
liver
4
pancreas
3
blood
3
bodily fluid
3
epithelium
1
adipose tissue
1
connective tissue
1
spleen
Project
157
AMP
Genome assembly (visualization)
131
GRCh38
hg19
Lab
119
Katalin Susztak, Upenn
21
Bing Ren, UCSD
17
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
single cell RNA-seq
assembly!
hg19
BIOSAMPLE
ASSAY
157 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
6
islet of Langerhans
1
1
spleen
1
subcutaneous adipose tissue
1
cell line
HepG2
9
4
2
1
GM12878
3
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
9
primary cell
hepatocyte
1
Download