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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
17
pCHi-C
16
ATAC-seq
7
total RNA-seq
1
DNAme array
Assay category
46
DNA binding
16
DNA accessibility
7
Transcription
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
10
control
5
RNA binding protein
Date released
159
February, 2023
153
August, 2021
135
August, 2017
127
May, 2022
125
November, 2017
123
February, 2021
97
October, 2019
83
May, 2021
81
May, 2020
40
May, 2024
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
September, 2020
17
December, 2017
17
July, 2019
16
January, 2021
16
November, 2018
15
April, 2019
11
May, 2023
10
April, 2020
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
December, 2019
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
Available data
5
bam
4
fastq
1
tagAlign
Organism
87
Homo sapiens
Biosample type
43
in vitro differentiated cells
22
primary cell
19
cell line
3
tissue
Organ
18
pancreas
17
epithelium
3
blood
3
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
spleen
1
thymus
Project
70
AMP
17
T1D
Genome assembly (visualization)
hg19
302
GRCh38
Lab
60
Kyle Gaulton, UCSD
27
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
assay_title!
single cell RNA-seq
assembly!
hg19
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
pCHi-C
ATAC-seq
total RNA-seq
DNAme array
in vitro differentiated cells
embryonic stem cell
37
5
pancreatic PP cell
1
primary cell
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
B cell
1
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cell line
EndoC_BH1
16
GM12878
3
tissue
pancreas
1
spleen
1
thymus
1
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