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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
23
ChIP-seq
single cell RNA-seq
3
total RNA-seq
2
WGBS
2
pCHi-C
1
DNase-seq
Assay category
36
DNA accessibility
23
DNA binding
3
Transcription
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
October, 2019
3
February, 2020
2
February, 2021
2
July, 2019
2
March, 2020
1
June, 2019
Available data
36
bed narrowPeak
26
bam
5
tsv
2
bigWig
2
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
66
Homo sapiens
Biosample type
57
tissue
6
primary cell
3
cell line
Organ
288
pancreas
213
epithelium
165
liver
161
kidney
122
brain
112
heart
95
connective tissue
89
bone element
65
adipose tissue
65
blood vessel
65
vasculature
46
artery
27
eye
26
limb
22
musculature of body
14
blood
14
bodily fluid
12
nerve
11
lung
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
187
GRCh38
hg19
Lab
66
AMP-T2D consortium
assay_title!
single cell RNA-seq
assembly!
hg19
BIOSAMPLE
ASSAY
66 results
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ATAC-seq
ChIP-seq
total RNA-seq
WGBS
pCHi-C
DNase-seq
tissue
coronary artery
35
2
1
tibial artery
5
1
aorta
2
2
1
ascending aorta
3
1
thoracic aorta
4
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
MCF-7
1
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