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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
21
ChIP-seq
single cell RNA-seq
3
total RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
36
DNA accessibility
21
DNA binding
3
Transcription
2
DNA methylation
Target of assay
18
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
October, 2019
3
February, 2020
February, 2021
2
July, 2019
1
June, 2019
1
March, 2020
Available data
36
bed narrowPeak
24
bam
4
tsv
2
bigWig
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
63
Homo sapiens
Biosample type
57
tissue
6
primary cell
Organ
282
pancreas
207
epithelium
165
liver
158
kidney
122
brain
110
heart
95
connective tissue
65
adipose tissue
63
blood vessel
63
vasculature
44
artery
27
eye
26
limb
22
musculature of body
14
blood
14
bodily fluid
12
nerve
11
lung
11
spleen
8
embryo
5
bone element
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
127
GRCh38
hg19
Lab
63
AMP-T2D consortium
assay_title!
single cell RNA-seq
assembly!
hg19
month_released!
February, 2021
BIOSAMPLE
ASSAY
63 results
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ATAC-seq
ChIP-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
coronary artery
35
2
1
tibial artery
5
1
aorta
2
2
1
ascending aorta
3
1
thoracic aorta
4
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
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