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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
79
ChIP-seq
35
ATAC-seq
10
WGBS
5
total RNA-seq
4
DNase-seq
4
pCHi-C
Assay category
79
DNA binding
39
DNA accessibility
10
DNA methylation
5
Transcription
Target of assay
38
histone
38
histone modification
36
control
22
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
40
May, 2024
35
February, 2023
15
May, 2019
10
April, 2019
10
July, 2019
10
October, 2019
6
June, 2019
5
February, 2020
4
March, 2020
2
February, 2021
Available data
79
bed narrowPeak
51
bam
51
bigWig
9
tsv
7
bed bedMethyl
7
bigBed bedMethyl
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
2
tagAlign
Organism
137
Homo sapiens
Biosample type
126
tissue
9
primary cell
2
cell line
Organ
288
pancreas
213
epithelium
165
liver
161
kidney
122
brain
112
heart
95
connective tissue
89
bone element
65
adipose tissue
65
blood vessel
65
vasculature
46
artery
27
eye
26
limb
22
musculature of body
14
blood
14
bodily fluid
12
nerve
11
lung
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
350
GRCh38
hg19
Lab
97
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
assembly!
hg19
BIOSAMPLE
ASSAY
137 results
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ChIP-seq
ATAC-seq
WGBS
total RNA-seq
DNase-seq
pCHi-C
tissue
left cardiac atrium
40
coronary artery
2
35
1
heart left ventricle
6
4
1
tibial artery
5
1
aorta
2
2
1
+ See 7 more…
primary cell
endothelial cell of umbilical vein
5
cardiac fibroblast
2
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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