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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
34
ChIP-seq
4
DNase-seq
single cell RNA-seq
Assay category
56
Transcription
49
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
February, 2020
2
June, 2019
Available data
102
bam
85
bigWig
74
bed narrowPeak
56
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
139
Homo sapiens
Biosample type
71
tissue
66
cell line
2
primary cell
Organ
870
pancreas
789
liver
680
connective tissue
491
adipose tissue
454
epithelium
300
heart
290
kidney
283
brain
230
vasculature
224
blood vessel
159
bone element
139
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
139
AMP
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
139
AMP-T2D consortium
assay_title!
single cell RNA-seq
audit.ERROR.category!
inconsistent replicate
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
139 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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