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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
49
total RNA-seq
single cell RNA-seq
6
snATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
81
DNA accessibility
53
Transcription
1
3D chromatin structure
Date released
120
August, 2021
11
May, 2023
4
March, 2023
Available data
64
bed narrowPeak
64
xls
49
txt
1
hic
Organism
131
Homo sapiens
Biosample type
131
tissue
2
cell line
2
stem cell
Organ
131
kidney
Project
131
AMP
4
community
Genome assembly (visualization)
75
GRCh38
1
hg19
Lab
3700
AMP-T2D consortium
343
Kyle Gaulton, UCSD
239
Klaus Kaestner, Upenn
131
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
assay_title!
single cell RNA-seq
audit.ERROR.category!
inconsistent replicate
BIOSAMPLE
ASSAY
135 results
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ATAC-seq
total RNA-seq
snATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
75
49
6
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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