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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
32
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
74
Transcription
32
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
691
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
307
October, 2019
214
June, 2019
204
February, 2023
202
August, 2021
166
May, 2022
162
November, 2017
120
July, 2018
115
May, 2019
105
July, 2019
74
April, 2019
72
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
52
December, 2017
39
February, 2018
35
May, 2024
25
February, 2020
23
November, 2018
23
October, 2017
19
September, 2020
16
January, 2019
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2018
7
December, 2019
6
April, 2018
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
95
bed narrowPeak
64
xls
49
bam
49
txt
36
bigWig
25
tsv
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
201
Homo sapiens
Biosample type
123
tissue
42
in vitro differentiated cells
33
cell line
4
primary cell
Organ
122
kidney
24
liver
8
embryo
6
epithelium
5
connective tissue
4
pancreas
1
adipose tissue
Project
202
AMP
Genome assembly (visualization)
105
GRCh38
49
hg19
Lab
120
Katalin Susztak, Upenn
53
AMP-T2D consortium
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
single cell RNA-seq
audit.ERROR.category!
inconsistent replicate
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
202 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
6
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
7
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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