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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
Assay category
55
DNA binding
Target of assay
30
histone
30
histone modification
25
transcription factor
15
broad histone mark
15
narrow histone mark
13
chromatin remodeller
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
15
August, 2017
11
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
55
bam
55
bigWig
55
fastq
53
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
55
Homo sapiens
Biosample type
26
cell line
17
in vitro differentiated cells
6
tissue
4
primary cell
2
stem cell
Organ
27
liver
9
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
55
AMP
Genome assembly (visualization)
55
hg19
51
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
56
inconsistent control read length
9
inconsistent control run_type
inconsistent assembly
assay_title!
single cell RNA-seq
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
stem cell
hESC
2
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