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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
single cell RNA-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
ChIP-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
201
Transcription
136
DNA accessibility
47
DNA methylation
4
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
101
May, 2022
99
February, 2023
69
May, 2021
45
May, 2020
33
February, 2021
19
September, 2020
16
January, 2021
10
April, 2020
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
Available data
196
bigWig
186
bam
135
fastq
104
tsv
101
zippedFastqFolder
88
bed narrowPeak
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
409
Homo sapiens
Biosample type
360
primary cell
41
tissue
11
cell line
2
stem cell
Organ
186
pancreas
156
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
239
HPAP
160
T1D
10
LungMap
4
community
1
ITG
Genome assembly (visualization)
113
GRCh38
105
hg19
Lab
239
Klaus Kaestner, Upenn
152
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
9
inconsistent ontology term
assay_title!
single cell RNA-seq
award.project!
AMP
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
414 results
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total RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
ChIP-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
pancreatic alpha cell
42
29
31
1
monocyte
53
1
Langerhans cell
48
pancreatic beta cell
11
16
16
1
exocrine cell
39
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tissue
islet of Langerhans
7
6
11
2
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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