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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
135
total RNA-seq
84
ChIP-seq
66
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
139
Transcription
84
DNA binding
66
DNA accessibility
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
45
May, 2020
44
February, 2023
27
February, 2021
21
May, 2022
10
April, 2020
8
January, 2021
5
March, 2023
Available data
180
bam
180
bigWig
96
tsv
84
bed narrowPeak
84
tagAlign
66
fastq
21
zippedFastqFolder
1
hic
Organism
307
Homo sapiens
Biosample type
292
primary cell
11
tissue
7
cell line
2
stem cell
Organ
pancreas
156
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
210
T1D
87
HPAP
10
LungMap
4
community
1
ITG
Genome assembly (visualization)
181
GRCh38
180
hg19
Lab
210
Kyle Gaulton, UCSD
87
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
5
inconsistent ontology term
assay_title!
single cell RNA-seq
award.project!
AMP
organ_slims!
pancreas
BIOSAMPLE
ASSAY
312 results
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Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
48
exocrine cell
39
peripheral blood mononuclear cell
8
B cell
2
1
+ See 34 more…
tissue
lung
10
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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