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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
86
ChIP-seq
single cell RNA-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
194
Transcription
105
DNA accessibility
86
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
101
May, 2022
79
February, 2023
45
May, 2020
33
February, 2021
19
September, 2020
8
January, 2021
7
August, 2020
5
March, 2023
3
March, 2020
3
October, 2022
Available data
194
bigWig
184
bam
135
fastq
104
tsv
101
zippedFastqFolder
86
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
451
Homo sapiens
Biosample type
444
primary cell
tissue
9
cell line
2
stem cell
Organ
156
epithelium
156
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
239
HPAP
211
T1D
4
community
1
ITG
Genome assembly (visualization)
195
GRCh38
187
hg19
Lab
239
Klaus Kaestner, Upenn
207
Kyle Gaulton, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
9
inconsistent ontology term
assay_title!
single cell RNA-seq
HiChIP
biosample_type!
tissue
award.project!
AMP
BIOSAMPLE
ASSAY
455 results
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total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
29
31
1
Langerhans cell
48
pancreatic beta cell
11
16
16
1
exocrine cell
39
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cell line
EndoC_BH1
2
2
3
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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