Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
total RNA-seq
24
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
80
Transcription
24
DNA accessibility
Date released
359
May, 2021
324
November, 2017
158
February, 2021
148
May, 2020
127
August, 2017
110
February, 2023
101
May, 2022
90
August, 2021
72
October, 2019
72
September, 2018
61
November, 2018
55
June, 2019
46
December, 2017
39
February, 2018
28
December, 2018
28
July, 2019
24
March, 2020
23
January, 2019
21
November, 2019
September, 2020
12
November, 2020
8
January, 2021
7
August, 2020
6
January, 2018
5
December, 2019
5
March, 2023
5
May, 2019
5
September, 2017
4
October, 2022
2
October, 2018
1
August, 2018
Available data
76
fastq
12
tsv
5
bed bed3
4
bed bed3+
3
bed bedgraph
3
bigWig
3
txt
2
bed narrowPeak
Organism
109
Homo sapiens
Biosample type
tissue
88
primary cell
16
in vitro differentiated cells
6
cell line
Organ
38
epithelium
38
pancreas
13
connective tissue
Project
76
HPAP
29
AMP
5
T1D
Genome assembly (visualization)
12
hg19
Lab
76
Klaus Kaestner, Upenn
26
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
assay_title!
single cell RNA-seq
biosample_type!
tissue
month_released!
September, 2020
BIOSAMPLE
ASSAY
110 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
See all biosamples
Download