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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
259
ChIP-seq
245
total RNA-seq
200
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
283
DNA accessibility
259
DNA binding
247
Transcription
58
DNA methylation
6
3D chromatin structure
Target of assay
221
histone
221
histone modification
113
broad histone mark
108
narrow histone mark
29
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
53
June, 2019
36
February, 2021
24
July, 2019
19
September, 2020
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
October, 2018
1
March, 2023
Available data
489
bigWig
482
bam
278
bed narrowPeak
278
fastq
168
tsv
101
zippedFastqFolder
100
tagAlign
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
hdf5
1
bed bed3
Organism
870
Homo sapiens
Biosample type
tissue
870
primary cell
596
cell line
392
in vitro differentiated cells
10
stem cell
Organ
336
epithelium
272
pancreas
37
vasculature
36
kidney
35
connective tissue
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
426
AMP
239
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
503
hg19
418
GRCh38
Lab
391
AMP-T2D consortium
239
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
single cell RNA-seq
biosample_type!
tissue
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
870 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
31
1
pancreatic beta cell
13
21
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
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