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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
288
DNA accessibility
279
DNA binding
249
Transcription
58
DNA methylation
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
55
June, 2019
36
February, 2021
33
October, 2019
24
July, 2019
19
September, 2020
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
2
October, 2018
Available data
509
bam
509
bigWig
295
bed narrowPeak
281
fastq
170
tsv
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
1
bed bed3
1
tar
Organism
891
Homo sapiens
Biosample type
2547
tissue
891
primary cell
658
cell line
388
in vitro differentiated cells
10
stem cell
Organ
329
epithelium
269
pancreas
36
kidney
34
connective tissue
33
vasculature
27
blood vessel
20
vein
15
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
451
AMP
236
HPAP
204
T1D
Genome assembly (visualization)
519
hg19
435
GRCh38
Lab
416
AMP-T2D consortium
239
Kyle Gaulton, UCSD
236
Klaus Kaestner, Upenn
Audit category:
47
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
single cell RNA-seq
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
891 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
31
pancreatic beta cell
13
21
23
16
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
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