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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ChIP-seq
150
total RNA-seq
single cell RNA-seq
84
ATAC-seq
29
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
242
DNA binding
152
Transcription
114
DNA accessibility
Target of assay
203
histone
203
histone modification
103
narrow histone mark
100
broad histone mark
29
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
90
May, 2020
72
September, 2018
58
August, 2017
55
June, 2019
31
October, 2019
15
July, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
February, 2021
2
October, 2018
Available data
513
bigWig
509
bam
295
bed narrowPeak
281
fastq
170
tsv
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
509
Homo sapiens
Biosample type
1907
tissue
582
cell line
509
primary cell
291
in vitro differentiated cells
3
stem cell
Organ
172
epithelium
120
pancreas
32
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
14
brain
13
musculature of body
12
heart
12
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
329
AMP
180
T1D
Genome assembly (visualization)
474
hg19
425
GRCh38
Lab
329
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
38
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
509 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
7
pancreatic alpha cell
13
10
6
pancreatic endocrine cell
23
pancreatic ductal cell
13
4
4
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