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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
single cell RNA-seq
12
ATAC-seq
6
WGBS
2
small RNA-seq
Assay category
152
Transcription
12
DNA accessibility
6
DNA methylation
Date released
52
May, 2021
45
May, 2020
26
September, 2018
15
July, 2019
12
February, 2023
7
February, 2021
5
December, 2019
4
November, 2020
2
October, 2018
2
October, 2019
Available data
513
bigWig
509
bam
295
bed narrowPeak
281
fastq
170
tsv
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
170
Homo sapiens
Biosample type
973
tissue
170
primary cell
129
in vitro differentiated cells
119
cell line
4
stem cell
Organ
46
epithelium
34
pancreas
11
connective tissue
6
kidney
5
liver
4
heart
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
96
T1D
68
AMP
6
HPAP
Genome assembly (visualization)
152
GRCh38
152
hg19
Lab
96
Kyle Gaulton, UCSD
68
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
170 results
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total RNA-seq
ATAC-seq
WGBS
small RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
6
pancreatic beta cell
10
hepatocyte
5
osteoblast
5
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