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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
5
DNase-seq
3
Hi-C
single cell RNA-seq
1
RRBS
Assay category
9
DNA binding
5
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
3
RNA binding protein
3
control
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
9
November, 2017
5
June, 2019
4
July, 2019
Available data
17
bigWig
14
bam
11
bed broadPeak
11
bed narrowPeak
11
bigBed broadPeak
11
bigBed narrowPeak
9
fastq
8
bed bed3+
3
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
18
Homo sapiens
Biosample type
265
tissue
18
primary cell
Organ
336
epithelium
272
pancreas
37
vasculature
36
kidney
35
connective tissue
31
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
18
AMP
Genome assembly (visualization)
18
hg19
11
GRCh38
Lab
18
AMP-T2D consortium
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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