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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
38
ATAC-seq
7
total RNA-seq
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
73
DNA binding
43
DNA accessibility
7
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
35
February, 2023
26
October, 2019
7
July, 2019
3
February, 2020
3
June, 2019
3
March, 2020
Available data
100
bed narrowPeak
87
bam
70
bigWig
62
bigBed narrowPeak
8
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
127
Homo sapiens
Biosample type
127
tissue
66
cell line
31
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
360
liver
265
brain
235
kidney
180
heart
158
bone element
127
blood vessel
127
vasculature
122
limb
81
musculature of body
71
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
127
AMP
Genome assembly (visualization)
105
GRCh38
70
hg19
Lab
127
AMP-T2D consortium
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
127 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
1
2
tibial artery
23
1
1
2
ascending aorta
16
2
1
thoracic aorta
16
1
2
aorta
13
1
2
1
1
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