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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
530
ChIP-seq
257
ATAC-seq
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1047
Transcription
530
DNA binding
286
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
316
histone modification
315
histone
216
narrow histone mark
187
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
539
February, 2021
262
August, 2017
195
October, 2019
193
May, 2020
123
August, 2021
120
July, 2018
94
February, 2023
75
July, 2019
65
May, 2022
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
29
October, 2018
25
February, 2020
25
November, 2017
22
May, 2019
17
October, 2017
16
April, 2019
12
December, 2017
12
May, 2023
10
April, 2020
9
November, 2018
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1901
bam
1766
bigWig
984
bed narrowPeak
967
tsv
bigBed narrowPeak
371
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
144
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2033
Homo sapiens
Biosample type
2036
tissue
785
primary cell
375
in vitro differentiated cells
307
cell line
10
stem cell
Organ
537
connective tissue
478
adipose tissue
437
pancreas
311
liver
158
bone element
149
brain
148
kidney
132
heart
65
blood vessel
65
vasculature
53
eye
46
artery
43
musculature of body
38
limb
17
nerve
16
skeleton
15
epithelium
12
spleen
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1995
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1298
GRCh38
1256
hg19
Lab
1751
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
4
audit script error
Audit category:
23
missing controlled_by
assay_title!
single cell RNA-seq
files.file_type!
bigBed narrowPeak
month_released!
August, 2020
BIOSAMPLE
ASSAY
2036 results
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total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
71
68
7
4
3
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
3
1
1
1
1
kidney
49
9
75
6
1
1
bone element
84
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