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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
total RNA-seq
21
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
80
Transcription
21
DNA accessibility
Date released
107
February, 2023
101
May, 2022
94
May, 2021
58
May, 2020
51
February, 2021
47
November, 2017
43
August, 2021
33
August, 2017
25
October, 2019
16
September, 2020
15
March, 2020
10
December, 2017
9
July, 2019
9
November, 2019
8
February, 2018
8
January, 2021
8
June, 2019
7
November, 2020
5
March, 2023
4
November, 2018
4
October, 2022
3
January, 2019
1
August, 2018
1
December, 2018
1
May, 2019
Available data
76
fastq
12
tsv
5
bed bed3
4
bed bed3+
3
bed bedgraph
bigWig
3
txt
2
bed narrowPeak
Organism
106
Homo sapiens
Biosample type
tissue
88
primary cell
13
in vitro differentiated cells
6
cell line
Organ
38
epithelium
38
pancreas
13
connective tissue
Project
76
HPAP
26
AMP
5
T1D
Genome assembly (visualization)
9
hg19
Lab
76
Klaus Kaestner, Upenn
26
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
assay_title!
single cell RNA-seq
files.file_type!
bigWig
biosample_type!
tissue
BIOSAMPLE
ASSAY
107 results
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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
cell line
EndoC_BH1
3
2
1
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