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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
37
DNA accessibility
21
Transcription
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
12
February, 2020
12
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
240
bam
219
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
23
tsv
21
fastq
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
280
Homo sapiens
Biosample type
265
tissue
15
primary cell
Organ
871
pancreas
789
liver
679
connective tissue
491
adipose tissue
452
epithelium
290
kidney
280
brain
260
heart
228
vasculature
222
blood vessel
159
bone element
139
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
280
AMP
Genome assembly (visualization)
214
GRCh38
158
hg19
Lab
280
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
single cell RNA-seq
files.file_type!
hdf5
BIOSAMPLE
ASSAY
280 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
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