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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
23
DNase-seq
17
WGBS
Assay category
56
DNA binding
23
DNA accessibility
17
DNA methylation
Target of assay
52
histone
52
histone modification
36
broad histone mark
16
narrow histone mark
4
transcription factor
3
recombinant protein
1
RNA binding protein
Date released
54
November, 2017
23
June, 2019
9
November, 2018
8
July, 2019
2
August, 2017
Available data
394
bam
314
fastq
219
bed narrowPeak
160
tagAlign
153
bigWig
144
txt
101
zippedFastqFolder
93
tsv
79
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
2
bedpe bed3+
1
hic
1
vcf
Organism
96
Homo sapiens
Biosample type
84
tissue
7
primary cell
5
cell line
Organ
62
brain
9
heart
7
kidney
6
epithelium
6
pancreas
5
liver
3
connective tissue
2
adipose tissue
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
96
AMP
Genome assembly (visualization)
1015
GRCh38
hg19
Lab
96
AMP-T2D consortium
assay_title!
single cell RNA-seq
assembly!
hg19
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
DNase-seq
WGBS
tissue
layer of hippocampus
16
caudate nucleus
11
1
substantia nigra
10
middle frontal area 46
9
cingulate gyrus
5
+ See 22 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
cell line
HepG2
4
1
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