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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
737
ChIP-seq
228
total RNA-seq
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
11
DNase-seq
4
RRBS
2
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
737
DNA binding
228
Transcription
101
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Target of assay
421
transcription factor
165
histone modification
164
histone
146
control
87
broad histone mark
83
RNA binding protein
82
recombinant protein
77
narrow histone mark
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
324
November, 2017
233
August, 2017
87
November, 2018
76
February, 2023
72
September, 2018
60
October, 2018
51
December, 2017
35
December, 2018
33
February, 2021
30
January, 2019
24
May, 2022
19
September, 2020
17
October, 2017
11
September, 2017
7
August, 2020
6
April, 2018
2
July, 2018
1
January, 2018
1
March, 2019
Available data
3001
bam
2770
bigWig
1645
bed narrowPeak
1266
tsv
1089
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
145
txt
101
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
1082
Homo sapiens
Biosample type
427
cell line
377
tissue
281
primary cell
in vitro differentiated cells
4
stem cell
Organ
450
liver
402
pancreas
172
epithelium
60
blood
60
bodily fluid
43
adipose tissue
43
connective tissue
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
954
AMP
135
HPAP
Genome assembly (visualization)
798
hg19
741
GRCh38
1
hg18
Lab
928
AMP-T2D consortium
135
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
27
audit script error
Audit category:
83
missing controlled_by
Audit category:
39
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
assay_title!
single cell RNA-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1089 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
GRO-seq
Hi-C
cell line
HepG2
360
5
1
1
GM12878
60
tissue
islet of Langerhans
28
103
20
1
1
liver
67
1
2
1
body of pancreas
33
4
2
2
spleen
20
1
2
1
pancreas
16
2
1
+ See 8 more…
primary cell
pancreatic alpha cell
13
52
13
6
pancreatic beta cell
13
21
10
exocrine cell
39
Langerhans cell
27
pancreatic endocrine cell
23
+ See 6 more…
stem cell
hESC
3
1
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