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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
single cell RNA-seq
3
ATAC-seq
1
ChIP-seq
1
MPRA
1
snATAC-seq
Assay category
59
Transcription
4
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
February, 2021
49
August, 2021
7
February, 2023
7
May, 2022
1
October, 2019
1
October, 2022
Available data
2714
bam
2512
bigWig
1794
bed narrowPeak
1191
fastq
1042
bigBed narrowPeak
835
tsv
390
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
101
zippedFastqFolder
64
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
64
Homo sapiens
Biosample type
61
tissue
3
in vitro differentiated cells
1
cell line
Organ
49
kidney
6
pancreas
4
bone element
4
skeleton
1
brain
1
musculature of body
Project
65
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
49
Katalin Susztak, Upenn
7
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
single cell RNA-seq
month_released!
February, 2021
BIOSAMPLE
ASSAY
65 results
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total RNA-seq
ATAC-seq
ChIP-seq
MPRA
snATAC-seq
tissue
kidney
49
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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