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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
single cell RNA-seq
3
ATAC-seq
Assay category
55
Transcription
3
DNA accessibility
Date released
49
August, 2021
6
May, 2022
3
February, 2023
Available data
270
bigWig
234
bed narrowPeak
205
bam
161
fastq
112
tsv
101
zippedFastqFolder
84
tagAlign
64
xls
58
txt
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
58
Homo sapiens
Biosample type
55
tissue
3
in vitro differentiated cells
Organ
49
kidney
6
pancreas
Project
58
AMP
Genome assembly (visualization)
3
hg19
Lab
AMP-T2D consortium
49
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
58 results
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total RNA-seq
ATAC-seq
tissue
kidney
49
islet of Langerhans
6
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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