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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
55
Transcription
4
DNA accessibility
Date released
49
August, 2021
7
May, 2022
3
February, 2023
1
October, 2022
Available data
3226
bam
2971
bigWig
1769
bed narrowPeak
1337
tsv
1230
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
101
zippedFastqFolder
64
xls
60
txt
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
59
Homo sapiens
Biosample type
56
tissue
3
in vitro differentiated cells
1
cell line
Organ
bone element
49
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
60
AMP
Genome assembly (visualization)
4
hg19
Lab
49
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
2
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
single cell RNA-seq
organ_slims!
bone element
BIOSAMPLE
ASSAY
60 results
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total RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
islet of Langerhans
6
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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