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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
53
Transcription
4
DNA accessibility
Date released
84
February, 2021
49
August, 2021
7
February, 2023
1
May, 2022
1
October, 2022
Available data
2677
bam
2480
bigWig
1563
bed narrowPeak
1052
tsv
951
bigBed narrowPeak
828
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
142
txt
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
21
zippedFastqFolder
16
bedpe bed3+
16
hic
12
bed bed3
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
141
Homo sapiens
Biosample type
138
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
49
kidney
pancreas
4
skeleton
1
musculature of body
Project
142
AMP
Genome assembly (visualization)
4
hg19
Lab
90
AMP-T2D consortium
49
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
assay_title!
single cell RNA-seq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
142 results
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RNA microarray
total RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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