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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
55
Transcription
1
DNA accessibility
Date released
49
August, 2021
7
May, 2022
1
October, 2022
Available data
2929
bam
2746
bigWig
1677
bed narrowPeak
1202
tsv
1083
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
101
zippedFastqFolder
64
xls
57
txt
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
5
hdf5
4
tar
3
bed bed3
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
56
Homo sapiens
Biosample type
56
tissue
in vitro differentiated cells
1
cell line
Organ
bone element
49
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
57
AMP
Genome assembly (visualization)
1
hg19
Lab
49
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
single cell RNA-seq
organ_slims!
bone element
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
57 results
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total RNA-seq
MPRA
snATAC-seq
tissue
kidney
49
islet of Langerhans
6
skeletal muscle tissue
1
cell line
MIN6
1
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