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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
1
DNase-seq
1
whole genome sequencing assay
Assay category
17
DNA binding
1
DNA accessibility
1
DNA sequencing
Target of assay
13
transcription factor
4
histone
4
histone modification
3
broad histone mark
2
RNA binding protein
1
narrow histone mark
Date released
14
November, 2017
2
August, 2017
2
October, 2019
1
August, 2021
Available data
433
bam
371
fastq
239
bigWig
185
bed narrowPeak
152
tagAlign
148
txt
101
zippedFastqFolder
95
tsv
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
19
Homo sapiens
Biosample type
15
cell line
4
primary cell
Organ
15
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
19
AMP
Genome assembly (visualization)
GRCh38
262
hg19
Lab
18
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent control read length
assay_title!
single cell RNA-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
DNase-seq
whole genome sequencing assay
cell line
HepG2
14
1
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
1
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