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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
single cell RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
8
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
27
bigWig
19
bed narrowPeak
15
tagAlign
14
bam
13
bed broadPeak
9
tsv
6
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
52
Homo sapiens
Biosample type
49
tissue
3
primary cell
Organ
867
pancreas
788
liver
662
connective tissue
490
adipose tissue
434
epithelium
265
heart
253
brain
223
vasculature
219
blood vessel
209
kidney
159
bone element
137
artery
90
limb
69
blood
69
bodily fluid
54
eye
52
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
32
hg19
12
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
single cell RNA-seq
lab.title!
Maike Sander, UCSD
month_released!
June, 2019
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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