Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
9
DNase-seq
7
WGBS
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
FAIRE-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
113
DNA binding
92
DNA accessibility
74
Transcription
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
75
transcription factor
22
RNA binding protein
20
histone
20
histone modification
18
control
16
recombinant protein
11
narrow histone mark
9
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
697
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
218
June, 2019
213
August, 2021
204
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
6
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
1
August, 2018
1
August, 2022
Available data
179
bed narrowPeak
136
bam
127
bigWig
87
fastq
73
bigBed narrowPeak
64
xls
49
txt
25
tsv
24
tagAlign
14
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
vcf
Organism
299
Homo sapiens
Biosample type
149
tissue
105
cell line
42
in vitro differentiated cells
4
primary cell
Organ
122
kidney
88
liver
15
blood
15
bodily fluid
11
pancreas
9
spleen
8
embryo
6
connective tissue
6
epithelium
2
adipose tissue
2
brain
Project
300
AMP
Genome assembly (visualization)
184
GRCh38
131
hg19
Lab
140
AMP-T2D consortium
120
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
single cell RNA-seq
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
300 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
snATAC-seq
STARR-seq
Capture-C
Hi-C
FAIRE-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
6
1
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 5 more…
cell line
HepG2
63
9
1
2
1
1
GM12878
15
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
See all biosamples
Download