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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
18
total RNA-seq
5
ChIP-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
32
DNA accessibility
18
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
7
June, 2019
February, 2020
1
July, 2019
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
6
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
60
Homo sapiens
Biosample type
55
tissue
5
primary cell
Organ
871
pancreas
789
liver
678
connective tissue
489
adipose tissue
454
epithelium
290
kidney
271
brain
257
heart
227
vasculature
221
blood vessel
159
bone element
137
artery
119
limb
93
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
34
hg19
6
GRCh38
Lab
60
AMP-T2D consortium
assay_title!
single cell RNA-seq
month_released!
February, 2020
BIOSAMPLE
ASSAY
60 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
2
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
1
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