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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
200
DNA binding
21
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
177
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
23
control
Date released
86
October, 2019
82
November, 2017
June, 2019
28
May, 2019
15
July, 2019
12
February, 2020
6
October, 2017
2
March, 2020
1
February, 2023
Available data
210
bam
189
bigWig
173
bed narrowPeak
118
tagAlign
97
bigBed narrowPeak
23
tsv
fastq
17
bed broadPeak
8
bigBed broadPeak
5
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
232
Homo sapiens
Biosample type
228
tissue
4
primary cell
Organ
564
connective tissue
466
pancreas
446
adipose tissue
323
liver
265
heart
243
epithelium
232
brain
217
vasculature
216
blood vessel
209
kidney
159
bone element
137
artery
90
limb
54
eye
50
musculature of body
43
nerve
22
vein
16
skeleton
11
lung
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
232
AMP
Genome assembly (visualization)
169
GRCh38
124
hg19
Lab
232
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
single cell RNA-seq
month_released!
June, 2019
files.file_type!
fastq
BIOSAMPLE
ASSAY
232 results
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ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
angular gyrus
15
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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