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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
894
total RNA-seq
817
ChIP-seq
260
ATAC-seq
178
DNase-seq
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
910
Transcription
817
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
566
histone modification
565
histone
283
broad histone mark
282
narrow histone mark
164
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
242
October, 2019
May, 2020
163
June, 2019
123
August, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1714
bam
1562
bigWig
917
bed narrowPeak
830
tsv
561
bigBed narrowPeak
377
fastq
213
bed broadPeak
205
bed bed3+
188
tagAlign
176
bigBed broadPeak
144
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2361
Homo sapiens
Biosample type
2370
tissue
754
primary cell
661
cell line
392
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
265
brain
235
kidney
180
heart
167
liver
158
bone element
127
blood vessel
127
vasculature
122
limb
81
musculature of body
71
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2329
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1657
GRCh38
1585
hg19
Lab
2125
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
month_released!
May, 2020
BIOSAMPLE
ASSAY
2370 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
71
68
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
kidney
49
27
75
13
6
1
1
1
liver
24
95
20
2
3
1
1
1
1
bone element
84
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