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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
59
total RNA-seq
18
ChIP-seq
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
1
whole genome sequencing assay
Assay category
82
DNA accessibility
59
Transcription
18
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
156
August, 2021
11
May, 2023
2
March, 2019
Available data
78
bed narrowPeak
64
xls
49
txt
14
bigWig
10
tsv
3
hic
2
bedpe bed3+
1
bedpe
1
vcf
Organism
169
Homo sapiens
Biosample type
135
tissue
34
cell line
Organ
133
kidney
31
liver
4
pancreas
Project
169
AMP
Genome assembly (visualization)
76
GRCh38
18
hg19
Lab
3614
AMP-T2D consortium
343
Kyle Gaulton, UCSD
239
Klaus Kaestner, Upenn
131
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
month_released!
November, 2018
BIOSAMPLE
ASSAY
169 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
kidney
75
49
6
1
islet of Langerhans
1
1
2
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
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