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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
31
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
74
Transcription
31
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
694
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
275
October, 2019
210
June, 2019
204
February, 2023
201
August, 2021
166
May, 2022
120
July, 2018
105
July, 2019
97
May, 2019
81
November, 2018
73
December, 2017
72
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
47
October, 2018
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
September, 2020
16
January, 2021
12
May, 2023
11
November, 2020
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
6
April, 2018
5
March, 2019
5
March, 2023
5
September, 2017
4
October, 2022
1
August, 2018
1
August, 2022
Available data
106
bed narrowPeak
64
xls
49
txt
47
bigWig
41
bam
25
tsv
16
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
200
Homo sapiens
Biosample type
123
tissue
40
cell line
35
in vitro differentiated cells
3
primary cell
Organ
122
kidney
30
liver
8
embryo
5
connective tissue
5
epithelium
4
pancreas
1
adipose tissue
Project
201
AMP
Genome assembly (visualization)
105
GRCh38
60
hg19
Lab
120
Katalin Susztak, Upenn
45
AMP-T2D consortium
32
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
single cell RNA-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
201 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
6
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
cell line
HepG2
9
14
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
3
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